The Bloons TD6 mod has been updated, but the game recognises that you are using a mod and does not save and doesn’t save any progress that you have made. Which kinda makes it a bit pointless. Is this being worked on? I only have WeMod for that game.
Turns out that’s a bug with the most recent game update!
Try reinstalling the game and see if that removes the modified message. 
Thank you for the reply.
I have just uninstalled the game and reinstalled it.
The game still detectd WeMod. 
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Have you found a solution to this yet? I’m having the same issue.
Nah. I just ended up cancelling my subscription.
I had the same problem but i found a fix.
So you have to close btd6, go to task manager and close every program from wemod and then open btd6 again.
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I already uninstalled all wemod files, and I still have problems with the modified client pop up, the new game mode and the teams feature
I got flagged for using wemod so be cautious
So, although I know this is late, I did just find an answer for this. You need to go into Task manager and end all WeMod processes then open the game. It should set it back where it won’t be affected.